PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040084m
Common NameCISIN_1g040084mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 128aa    MW: 14605.2 Da    PI: 5.915
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040084mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407e-1314101296
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +k+ +ps  l+ +  ++p+k +++++++   s    ++ ++g +W+vkl  +k ++++++ +GW++Fv+a    +g  v+F+++++s+f+ +
  orange1.1g040084m  14 VKAVLPST-LRDQKPRIPNKIVRKFSHE--LSDVAHITIPNGYVWQVKL--KKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAH 100
                        55555544.4455599******999744..6767778889*********..********************************999999544 PP

                        EEE CS
                 B3  94 vkv 96 
                          +
  orange1.1g040084m 101 --I 101
                        ..4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1910107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-1910107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1211103No hitNo description
PROSITE profilePS5086311.25112105IPR003340B3 DNA binding domain
SMARTSM010191.2E-1013105IPR003340B3 DNA binding domain
PfamPF023621.1E-1014102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
PISPSSPEIP PRFVKAVLPS TLRDQKPRIP NKIVRKFSHE LSDVAHITIP NGYVWQVKLK  60
KEGRKVWFDD GWQDFVEAYS TFVGSLVLFE YESNSTFQAH IYDETACEIN YPSSNEESHT  120
NGEESHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015381359.16e-60PREDICTED: B3 domain-containing protein At4g01580-like
TrEMBLA0A067EKY74e-91A0A067EKY7_CITSI; Uncharacterized protein (Fragment)
STRINGPOPTR_0004s15430.12e-28(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-29B3 family protein